- 3-frame translation (forward)
- Selecting this track displays the 3-frame translation for the forward strand. At low magnifications it indicates the position of start and stop codons for each frame, zooming into display a region of 100bp or less results in the amino acid translation being shown.
- DNA/GC Content
- Selecting this track displays information on the currently displayed genomic sequence. At zzomed out magnifications it displays a GC content plot, at regions of 100bp or less it displays the genomic DNA.
- 3-frame translation (reverse)
- Selecting this track displays the 3-frame translation for the reverse strand. At low magnifications it indicates the position of start and stop codons for each frame, zooming into display a region of 100bp or less results in the amino acid translation being shown.
- SNAP gene predictions
- The SNAP gene predictions track shows gene models predicted by Ian Korf's gene prediction algorithm which had been trained on Aspergillus data. Using the mouse to hover over a gene prediction will give you information on the top blastp match from the nr database to this gene model. Clicking on the gene model will take you to a page summarising all the available information on this gene model.
- SNAP gene predictions
- The SNAP gene predictions track shows gene models predicted by Ian Korf's gene prediction algorithm which had been trained on Aspergillus data. Using the mouse to hover over a gene prediction will give you information on the top blastp match from the nr database to this gene model. Clicking on the gene model will take you to a page summarising all the available information on this gene model.
- tRNA predictions from tRNAscan-SE
- This track contains tRNA predictions from tRNAscan-SE
- Blat aligned TIGR microarray sequences (other)
- The sequences present on the Aspergillus flavus microarray printed at TIGR. The Sequence names correspond to the clone_IDs used for the spots present on the microarray. Clicking on the feature takes you to a page showing all the available information on this sequence. This new page also includes a link to the TIGR web page about the sequence. This track contains matches that are not the highest scoring alignment for the sequence in the A. flavus genome.
- Blat aligned TIGR microarray sequences (best)
- The sequences present on the Aspergillus flavus microarray printed at TIGR. The Sequence names correspond to the clone_IDs used for the spots present on the microarray. Clicking on the feature takes you to a page showing all the available information on this sequence. This new page also includes a link to the TIGR web page about the sequence. This track contains matches that are the best alignment for the sequence in the A. flavus genome.
- Blat aligned ESTs (other)
- The Blat aligned ESTs (other) track shows A. flavus EST sequences generated by Dr Gary Payne's Lab at North Carolina State University aligned to the A. flavus genome scaffolds using BLAT. This track contains the non-highest scoring matches. Clicking on the EST sequence will link to a page showing all the information available about the EST sequence including a view of its alignment to the genome and a link to its entry in GenBank. Hovering the mouse over the EST sequence graphic will give you information on the percent of the EST length matched and the percentage identity.
- Blat aligned ESTs (other)
- The Blat aligned ESTs (other) track shows A. flavus EST sequences generated by Dr Gary Payne's Lab at North Carolina State University aligned to the A. flavus genome scaffolds using BLAT. This track contains the non-highest scoring matches. Clicking on the EST sequence will link to a page showing all the information available about the EST sequence including a view of its alignment to the genome and a link to its entry in GenBank. Hovering over the EST sequence graphic will give you information on the percent of the EST length matched and the percentage identity.
- Blat aligned ESTs (best)
- The Blat aligned ESTs (best) track shows A. flavus EST sequences generated by Dr Gary Payne's Lab at North Carolina State University aligned to the A. flavus genome scaffolds using BLAT. This track contains the highest scoring matches. Clicking on the EST sequence will link to a page showing all the information available about the EST sequence including a view of its alignment to the genome and a link to its entry in GenBank. Hovering over the EST sequence graphic will give you information on the percent of the EST length matched, the percentage identity and if the EST matches elsewhere in the genome.
- Blat aligned ESTs (best)
- The Blat aligned ESTs (best) track shows A. flavus EST sequences generated by Dr Gary Payne's Lab at North Carolina State University aligned to the A. flavus genome scaffolds using BLAT. This track contains the highest scoring matches. Clicking on the EST sequence will link to a page showing all the information available about the EST sequence including a view of its alignment to the genome and a link to its entry in GenBank. Hovering over the EST sequence graphic will give you information on the percent of the EST length matched, the percentage identity and if the EST matches elsewhere in the genome.
- TIGR AFGI matches (best)
- The TIGR AFGI matches (best) track contains sequences from TIGR's A. flavus gene index aligned to the A. flavus genome scaffolds using BLAT. This track contains the highest scoring alignments. Clicking on an sequence links to a page showing all the information available about the sequence including a view of its alignment to the genome and a link to its associated entry in the A. flavus gene indices at TIGR. Hovering over the sequence graphic gives information on the percent of the sequece length matched, the percentage identity and if the sequence matches elsewhere in the genome.
- TIGR AFGI matches (best)
- The TIGR AFGI matches (best) track contains sequences from TIGR's A. flavus gene index aligned to the A. flavus genome scaffolds using BLAT. This track contains the highest scoring alignments. Clicking on an sequence links to a page showing all the information available about the sequence including a view of its alignment to the genome and a link to its associated entry in the A. flavus gene indices at TIGR. Hovering over the sequence graphic gives information on the percent of the sequece length matched, the percentage identity and if the sequence matches elsewhere in the genome.
- TIGR AFGI matches (other)
- The TIGR AFGI matches (other) track contains sequences from TIGR's A. flavus gene index aligned to the A. flavus genome scaffolds using BLAT. This track contains the non-highest scoring alignments. Clicking on an sequence links to a page showing all the information available about the sequence including a view of its alignment to the genome and a link to its associated entry in the A. flavus gene indices at TIGR. Hovering over the sequence graphic gives information on the percent of the sequece length matched and the percentage identity between it and the genomic sequence.
- TIGR AFGI matches (other)
- The TIGR AFGI matches (other) track contains sequences from TIGR's A. flavus gene index aligned to the A. flavus genome scaffolds using BLAT. This track contains the non-highest scoring alignments. Clicking on an sequence links to a page showing all the information available about the sequence including a view of its alignment to the genome and a link to its associated entry in the A. flavus gene indices at TIGR. Hovering over the sequence graphic gives information on the percent of the sequece length matched and the percentage identity between it and the genomic sequence.
- New Orleans USDA EST matches (other)
- The New Orleans USDA EST matches (other) track shows A. flavus EST sequences generated by a research group working for the USDA in New Orleans aligned to the A. flavus genome scaffolds using BLAT. This track contains the non-highest scoring matches. Clicking on the EST sequence links to a page showing all the information available about the sequence including a view of its alignment to the genome and a link to its entry in GenBank. Hovering over the sequence graphic will give you information on the percent of the EST length matched and the percentage identity between the EST and the genomic sequence.
- New Orleans USDA EST matches (other)
- The New Orleans USDA EST matches (other) track shows A. flavus EST sequences generated by a research group working for the USDA in New Orleans aligned to the A. flavus genome scaffolds using BLAT. This track contains the non-highest scoring matches. Clicking on the EST sequence links to a page showing all the information available about the sequence including a view of its alignment to the genome and a link to its entry in GenBank. Hovering over the sequence graphic will give you information on the percent of the EST length matched and the percentage identity between the EST and the genomic sequence.
- New Orleans USDA EST matches (best)
- The New Orleans USDA EST matches (best) track shows A. flavus EST sequences generated by a research group working for the USDA in New Orleans aligned to the A. flavus genome scaffolds using BLAT. This track contains the highest scoring matches. Clicking on the EST sequence links to a page showing all the information available about the sequence including a view of its alignment to the genome and a link to its entry in GenBank. Hovering over the sequence graphic will give you information on the percent of the EST length matched, the percentage identity and if the EST matches elsewhere in the genome.
- New Orleans USDA EST matches (best)
- The New Orleans USDA EST matches (best) track shows A. flavus EST sequences generated by a research group working for the USDA in New Orleans aligned to the A. flavus genome scaffolds using BLAT. This track contains the highest scoring matches. Clicking on the EST sequence will link to its entry in GenBank, hovering over it will give you information on the percent of the EST length matched, the percentage identity and if the EST matches elsewhere in the genome.
- A. parasiticus aflatoxin cluster genes
- The aflatoxin cluster genes sequences from A. parasiticus aligned to the A. flavus genome using BLAT.
- aflatoxin cluster genes
- The aflatoxin cluster genes sequences from A. parasiticus aligned to the A. flavus genome using BLAT.
- Blastp matches to SNAP protein predictions
- The Blastp matches to snap protein predictions show the results of running a blastp search of the protein sequence corresponding to the SNAP gene prediction against the ncbi nr database. Hits with an e-value below 10-3 and covering at least 70% of the length of the predicted protein sequence are shown. This track is only displayed when looking at a SNAP protein sequence view, this is accessed by selecting the protein_view link from the gbrowse details page for each SNAP gene.
- SNAP protein matches to aspergillus proteins
- The Aspergillus proteins track shows the blast matches returned from running a tblastn search of all the Aspergillus protein sequences obtained from the NCBI entrez protein database against the A. flavus genome scaffolds.
- SNAP protein matches to A. nidulans proteins
- The A. nidulans proteins track shows the blast matches returned from running a tblastn search of all the Aspergillus nidulans protein sequences obtained from the NCBI entrez protein database against the A. flavus genome scaffolds.
- SNAP protein matches to A. oryzae proteins
- The A.oryzae proteins track shows the blast matches returned from running a tblastn search of all the Aspergillus oryzae protein sequences obtained from the NCBI entrez protein database against the A. flavus genome scaffolds.
- SNAP protein matches to A. terreus proteins
- The Aspergillus terreus proteins track shows the blast matches returned from running a tblastn search of all the Aspergillus protein sequences obtained from the NCBI entrez protein database against the A. flavus genome scaffolds.
- A. fumigatus blastn
- The A. fumigatus blastn track shows the blast matches returned from running a blastn search of the Aspergillus fumigatus genome sequenceagainst the A. flavus genome scaffolds.
- A. nidulans blastn
- The A. nidulans blastn track shows the blast matches returned from running a blastn search of the Aspergillus nidulans genome sequence against the A. flavus genome scaffolds.
- A. oryzae genes
- The A.oryzae genes track shows the blast matches returned from running a blastn search of all the Aspergillus oryzae gene sequences obtained from the NCBI entrez nucleotide database against the A. flavus genome scaffolds.
- A. terreus blastn
- The A. terreus blastn track shows the blast matches returned from running a blastn search of the Aspergillus terreus genome sequence against the A. flavus genome scaffolds.
- TIGR gene models
- The official A. flavus gene models predicted by TIGR's automatic genome annotation pipeline. Clicking on a gene model currently gives information the predicted gene function, Pfam and InterPro domain matches and GO terms associated with the sequence. Further annotation will be added as it becomes available.
- TIGR gene models
- The official A. flavus gene models predicted by TIGR's automatic genome annotation pipeline. Clicking on a gene model currently gives information the predicted gene function, Pfam and InterPro domain matches and GO terms associated with the sequence. Further annotation will be added as it becomes available.
Note: This page uses cookies to save and restore preference information.
No information is shared.
Generic genome browser version 1.63